Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDFGAFSNERTDYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEF-EGGRHAKRVEMIARIEDEND
4LFM Chain:D ((1-148))
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPN-
General information:
TITO was launched using:
RESULT:
Template:
4LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91209 for 1242 contacts (-73.4/contact) +
2D Compatibility (PS) -16085 + (NN) -6785 + (LL) -76
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -128855.0 ( -103.75 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFM-query.scw
PDB file :
Tito_Scwrl_4LFM.pdb
: