Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGM-IAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINK-KSPYRIDKDSLDI
2GAU Chain:A ((29-227))
-----------------LDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILR------RFHISRIVKPGQFFGMRPYFA-EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENFGFEN---DGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQK
General information:
TITO was launched using:
RESULT:
Template:
2GAU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114728 for 1386 contacts (-82.8/contact) +
2D Compatibility (PS) -20431 + (NN) -2484 + (LL) 1624
1D Compatibility (HY) -4800 + (ID) 1800
Total energy: -142619.0 ( -102.90 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2GAU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GAU-query.scw
PDB file :
Tito_Scwrl_2GAU.pdb
: