Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
2KA5 Chain:A ((16-124))
----YKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVERVLSLTNLDR-IVKIYDTISEAMEEVRR----
General information:
TITO was launched using:
RESULT:
Template:
2KA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108824 for 802 contacts (-135.7/contact) +
2D Compatibility (PS) -11382 + (NN) -2123 + (LL) 268
1D Compatibility (HY) -6000 + (ID) 650
Total energy: -128711.0 ( -160.49 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2KA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KA5-query.scw
PDB file :
Tito_Scwrl_2KA5.pdb
: