Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNIVMGIDEPTEKISVKKDGATYLLEPKAILYFEAVESK-IFVYTEKEIYEIHWKLYELEEKFKDSSFFRCSKSMILNIEWIEKIAPGFHGKFEAKLFNREKVIISRQYAKVLKQKLNMGGKRK
2LVC Chain:A ((1-90))
----------------------------------------------HMPVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVA-GDECAYFTVTI---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21499 for 586 contacts (-36.7/contact) +
2D Compatibility (PS) -9338 + (NN) 1319 + (LL) 4164
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -28704.0 ( -48.98 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_2LVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVC-query.scw
PDB file :
Tito_Scwrl_2LVC.pdb
: