Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPSKKKKIVVIGRSNLQNLYIHTVLLKKLPAEIYLID---DQAKTSVQDFDYASYYHAD-VTIHSGTFNECRNADIVVFF----QEEMSNQIVSKEDNVALIIEKVKKMMATGFRGIVLVATAESNVVAALIKRFSGLSANQIITLGTMLATSYFQVEIAKLFKISPKNVHGYIIGDNAEDVIPVWSRAFLGGKPILSYLAEDQKRISAEDLQNLTKMITKIPDFPFE--NKDGCTFRFSTVTVLAELTEVILRDEARVITVGVEVKEAYGLENPVFISVPAVIGAEGVRELLELNLSDDEQKELKQIAAKTTEKLEELQLNKGGIS |
1LDN Chain:B ((8-305)) | ------RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK-LVESKGEEAQKDLE---RIFVNVRDAAYQIIEKKGATY-YGIAMGLARVTRAILHNENAILTVSAYLDGLYG-ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAA----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243380 for 2469 contacts (-98.6/contact) +
2D Compatibility (PS) -30774 + (NN) -10306 + (LL) 1756
1D Compatibility (HY) -28000 + (ID) 4900
Total energy: -315604.0 ( -127.83 by residue)
QMean score : 0.582
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