Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMDTLGFLELNSISKGIEAVDTMLKAANSELIYAKASCPGKYYILIAGTVDSVAQSIEAGTKIGAANIVGNLVIPRVSDQVIKAINKTEVPDEMNAVGVMEYYSCSGSIIAADAAVKAADVQLMDIRLATGIAGKSFVVLTGDTAACETAVEAGLAAAKEEALLINKVVIPRPRKEVFESLIY
4DDF Chain:F ((5-182))
-----IGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMV-
General information:
TITO was launched using:
RESULT:
Template:
4DDF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142530 for 1508 contacts (-94.5/contact) +
2D Compatibility (PS) -18759 + (NN) -929 + (LL) 548
1D Compatibility (HY) -18800 + (ID) 3150
Total energy: -183620.0 ( -121.76 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4DDF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DDF-query.scw
PDB file :
Tito_Scwrl_4DDF.pdb
: