Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDIL--YKKTQA------VEY-----FQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFS--PMFASI-----FAKPVIGIVTKVDLAESDKDI---------ERAERELRMAGAKHIFYISSVEETGIEELRAYLED
2J0V Chain:A ((10-175))
-IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE----DYS--RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI-
General information:
TITO was launched using:
RESULT:
Template:
2J0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53480 for 991 contacts (-54.0/contact) +
2D Compatibility (PS) -14341 + (NN) -610 + (LL) 672
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -73359.0 ( -74.03 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_2J0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J0V-query.scw
PDB file :
Tito_Scwrl_2J0V.pdb
: