Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGG--IILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
3FFW Chain:B ((6-115))
------KFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATL-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52547 for 814 contacts (-64.6/contact) +
2D Compatibility (PS) -11642 + (NN) -6607 + (LL) 7336
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -72860.0 ( -89.51 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3FFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFW-query.scw
PDB file :
Tito_Scwrl_3FFW.pdb
: