Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVELGVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQTSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILMAKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSFTEQGNNIKRVILGEKIGTTVRGKK
3NWY Chain:D ((50-279))
-----YSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF----QLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAK-AVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDG-NIARAVRGEKIGTLV----
General information:
TITO was launched using:
RESULT:
Template:
3NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186151 for 1896 contacts (-98.2/contact) +
2D Compatibility (PS) -25083 + (NN) -12781 + (LL) -160
1D Compatibility (HY) -24800 + (ID) 6200
Total energy: -255175.0 ( -134.59 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWY-query.scw
PDB file :
Tito_Scwrl_3NWY.pdb
: