Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIIEVNNVSYHYDKEH-----ALENIHFQVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSISLFG----EKQADFKDWVK-IGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNKDKEDIDYALKRVEMTDYL-HRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISINK-RIIFDGSAHEYQHYLADRELEILAEQRRREDACLDCDASPV
4MKI Chain:B ((7-234))
----IKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEY--QLFEETVFKDIAFGPSN----LGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPRE-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137997 for 1644 contacts (-83.9/contact) +
2D Compatibility (PS) -23070 + (NN) -8077 + (LL) 3324
1D Compatibility (HY) -15200 + (ID) 3750
Total energy: -184770.0 ( -112.39 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: