Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPK-LAKEADLTSDAYIKLALQLMTK
2ZTD Chain:B ((21-210))
----VRGEVLEVALDHVVIEAAGVGYRV-NATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-----------------V--RSPVVE----ALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104880 for 1247 contacts (-84.1/contact) +
2D Compatibility (PS) -19012 + (NN) -6951 + (LL) 2588
1D Compatibility (HY) -11200 + (ID) 3100
Total energy: -142555.0 ( -114.32 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTD-query.scw
PDB file :
Tito_Scwrl_2ZTD.pdb
: