Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLESVEQFN------AIKSEGKSVFM-FSADWCGDCKFIEPVMPEIEAENE-DFSFYHVDRDEFIDLCADLAIFGIPSFLAFEDGEEVGRFVSKDRK--TKEEINDFLAAI
2YNX Chain:B ((2-106))
-----SVVQLNDENFDEVIKKNNKVVVVDFWAEWCGPCRMIAPIIEELAKEYAGKVVFGKLNVDENPEIAAKYGIMSIPTLLFFKNGKVVDQLVGAMPKEALKERIKKYL---
General information:
TITO was launched using:
RESULT:
Template:
2YNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50168 for 661 contacts (-75.9/contact) +
2D Compatibility (PS) -10029 + (NN) -294 + (LL) 964
1D Compatibility (HY) -11200 + (ID) 1750
Total energy: -72477.0 ( -109.65 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_2YNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YNX-query.scw
PDB file :
Tito_Scwrl_2YNX.pdb
: