Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIGGVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYK---------LIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRSWLRFTIGILALGIVIFVMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNEKLALWANKFKKA-
1D2T Chain:A ((7-230))
GNDTTTKPDLYYLKNSEAINSLALLPPPPAVGSIAFLNDQAMYEQGRLLRNTERGKLAAEDANLSSGGVANAFSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNTQDKLSKNGSYPSGHTSIGWATALVLAEIN----------PQRQNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKAEFAQHQK
General information:
TITO was launched using:
RESULT:
Template:
1D2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -212975 for 1787 contacts (-119.2/contact) +
2D Compatibility (PS) -20150 + (NN) 6771 + (LL) 1140
1D Compatibility (HY) 10800 + (ID) 1450
Total energy: -215864.0 ( -120.80 by residue)
QMean score : 0.168
(partial model without unconserved sides chains):
PDB file :
Tito_1D2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2T-query.scw
PDB file :
Tito_Scwrl_1D2T.pdb
: