Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNLLVVGSGGRE-HAISKKLLASNNVEKVFCAPGNDGMRLDDI-QLVAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEGSKDFAKQFMEKYAIPTAASRTFTDYAEAKAYLNERGVPIVIKADGLAAGKGVTVALEMEEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMSIAQDHKRAYEGDKGPNTGGMGAYSPVPHISEAVIEEAVQK-----ILLPTAKGMVKEGRYFRGILYAGLILTA-DGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVR--FKKTGLTLGVVLASAGYPEHYEKGNKLTGLNDI-AEDVAIYHAGTKQDENGDFISDGGRVLLLAKEAETMSDARTLLYPEMQKLDNPNFFYRIDIGTKAE |
3MJF Chain:A ((4-426)) | MNILIIGNGGREHALGWKAAQSPL-ADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRV-MDQVIWPTVRGMAAEGN----IYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDER-PSLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGYRA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MJF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211654 for 3634 contacts (-58.2/contact) +
2D Compatibility (PS) -45249 + (NN) -24555 + (LL) 140
1D Compatibility (HY) -27600 + (ID) 9350
Total energy: -318268.0 ( -87.58 by residue)
QMean score : 0.515
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