Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETK---PRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLL----KNYPLTDKQKTWLKEWSDSK
4H3Y Chain:B ((22-266))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAV-DSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWL-------
General information:
TITO was launched using:
RESULT:
Template:
4H3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148926 for 1659 contacts (-89.8/contact) +
2D Compatibility (PS) -25837 + (NN) -8843 + (LL) 308
1D Compatibility (HY) -22800 + (ID) 5350
Total energy: -211448.0 ( -127.46 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Y-query.scw
PDB file :
Tito_Scwrl_4H3Y.pdb
: