Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTDEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL
3TM7 Chain:D ((1-91))
------------------------SCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVAGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK------------
General information:
TITO was launched using:
RESULT:
Template:
3TM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57397 for 572 contacts (-100.3/contact) +
2D Compatibility (PS) -10334 + (NN) -5850 + (LL) 3072
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -80009.0 ( -139.88 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3TM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TM7-query.scw
PDB file :
Tito_Scwrl_3TM7.pdb
: