Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFK-QKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
3HZ4 Chain:A ((7-114))
----------------------------------------SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP--------WTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHG--
General information:
TITO was launched using:
RESULT:
Template:
3HZ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39169 for 792 contacts (-49.5/contact) +
2D Compatibility (PS) -11518 + (NN) -7305 + (LL) 4272
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -58620.0 ( -74.02 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3HZ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HZ4-query.scw
PDB file :
Tito_Scwrl_3HZ4.pdb
: