Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VTFERLGTMNVNAEGHLEIGGVDTLKLADKYGTPLYVYDVALIRDRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELFTAIKANFPPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTPGIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFETTGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEV---RDVAESNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRPALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGAYGYAMASNYNRIPRPPVVFVENGVDKLIVARETYENLVQNDLSL |
3N2B Chain:C ((28-432)) | --------FNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGD--YPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNK--FGITFDRAAQ-VYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLL-ALIDSLKAEGIHIRHLDVGGGLGVV--------QPSEYAKALLDRLERHRDL---------ELIFEPGRAIAANAGVLVTKVEFLKHTEH-KNFAIIDAAMNDLIR------WQD-IIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N2B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -275240 for 3320 contacts (-82.9/contact) +
2D Compatibility (PS) -42247 + (NN) -12773 + (LL) 2692
1D Compatibility (HY) -24000 + (ID) 6750
Total energy: -358318.0 ( -107.93 by residue)
QMean score : 0.519
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