Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVAISGGGTGGHVYPALALIRELKKSHPEAEFLYIGTEKGLEAGIVKREGIPFEAIEITGFKR---------SLS---------LENIKT----VMRF-LSGAKKSKQILRDFKPDVVIGTGGYVCGPVVYAAAKLKIPTLIHEQNSVAGL-----TNKFLSRY--------T---DKVAICFEEVSDSFAS-----EKIVFTGNPRASEVVGVDSEGALEAYGLVSGKPTVLVFGGSRGARGVN-EAVEAVLPEWNNRDFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELTALGVPSILIPSPYVTANHQENNARA--LEKNNAAIVITEAELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK |
3OTI Chain:A ((21-396)) | MRVLFVSSPGIGHLFPLIQLAWGFRTAG--HDVLIAVAEHA---DRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT--VGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLP----------PVPARPEVAITMGT-IELQAFGIGAVEPIIAAAGEVDADFV-LALGDLDIS---PLG--TLPRNVRAVGWTP-LHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPR----DQFQHTAREAVSRRGIGLVSTSDKV---D-ADLLRRLIGDESLRTAAREVREEMVALPTPAETVRRIVERI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OTI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164191 for 2811 contacts (-58.4/contact) +
2D Compatibility (PS) -35930 + (NN) -16788 + (LL) 1996
1D Compatibility (HY) -12000 + (ID) 2400
Total energy: -229313.0 ( -81.58 by residue)
QMean score : 0.450
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