Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPF--FDGDMVLDLFAGSGGLGIEALSRGAERAVFIDQAALAIKTIRQNLEGCHFTERAEVYRNDAERALKLLHKNEWKFDLIFLDPPYKKQQL--EKLIGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKSVSYGITVLSIFEFQEA
3P9N Chain:A ((4-184))
-RIIGGVAGGRRIAVPP-RG---TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS-GATLRRGAVAAVVAAG--TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAER---
General information:
TITO was launched using:
RESULT:
Template:
3P9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96945 for 1412 contacts (-68.7/contact) +
2D Compatibility (PS) -18667 + (NN) -5995 + (LL) 628
1D Compatibility (HY) -7600 + (ID) 2600
Total energy: -131179.0 ( -92.90 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3P9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P9N-query.scw
PDB file :
Tito_Scwrl_3P9N.pdb
: