Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSLEEALLFREATVTDLKSIMNVENAAFTVPWTEAAFRNEFIINQYAYYL--LAIYKEQVVGYAGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAKERGVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTK--EDALVMWVDL
2CNM Chain:B ((8-142))
------------STTDLPAAWQIEQRAHAFPWSEKTFFG----NQGERYLNLKLTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIM----
General information:
TITO was launched using:
RESULT:
Template:
2CNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82647 for 875 contacts (-94.5/contact) +
2D Compatibility (PS) -13953 + (NN) -3398 + (LL) 2616
1D Compatibility (HY) -9200 + (ID) 2700
Total energy: -109282.0 ( -124.89 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2CNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNM-query.scw
PDB file :
Tito_Scwrl_2CNM.pdb
: