Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLKETLDQFASIDNILKLLKKNPSFNKHCIQERLPQKTIITS-NKQRKHIYIIEEGFMKLIFDDN-KPRDFSYILSKGAFPFLPVYIEDIPEHTMMVALTDIVWWKIDIGFFKSMMEIEDPRNYLMLHQLAETRRRFYT-IAYQEKLTSRESIYYSLSTL-IEFGLRISEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILESQKKPWRINDVQKLQKLIEMNVPL-VKIQKKLRADLHS
3E6C Chain:C ((25-233))
----------------------LRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTG---NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVG-DTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQTSYYS-------------
General information:
TITO was launched using:
RESULT:
Template:
3E6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117210 for 1412 contacts (-83.0/contact) +
2D Compatibility (PS) -21600 + (NN) -2897 + (LL) 3500
1D Compatibility (HY) -7200 + (ID) 1150
Total energy: -146557.0 ( -103.79 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3E6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E6C-query.scw
PDB file :
Tito_Scwrl_3E6C.pdb
: