Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNAVSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
3QUG Chain:A ((5-117))
----------------------------QLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPYIPDKAVYNAIVKVVV--ANIGYEGQYHVRIINQDI----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47640 for 789 contacts (-60.4/contact) +
2D Compatibility (PS) -12906 + (NN) -7323 + (LL) 6420
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -69349.0 ( -87.89 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_3QUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QUG-query.scw
PDB file :
Tito_Scwrl_3QUG.pdb
: