Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MSFILEVGSLADWVSGLATVGALFWAIKLNSNENRKRLTILFRHSFVSKKNGIIISDGKPKVFIITPVNNSKFSLEINFRQILLVPSLMDRLLFRAEPKKLSNIEALLKQLENKANWQIIKPNLSGEP--IMFDYEFIVKQIKKYADGKRFNFAIEIQFIDSTSKIFKHKEKLELRKIKGL
4QFR Chain:B ((13-204))
PTVFRWTGGGKEVYLSGSFNNWSKLPLTRDQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFE-------------VFDALMVDSQKAPPILPPHLLQVILNKS----CDPALLPEPNHVMLNHLYALS----IKDG---------VMVLSATHRYKKKYVTTLLYKPI-
General information:
TITO was launched using:
RESULT:
Template:
4QFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34051 for 776 contacts (-43.9/contact) +
2D Compatibility (PS) -16138 + (NN) -2476 + (LL) 3368
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -57497.0 ( -74.09 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_4QFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QFR-query.scw
PDB file :
Tito_Scwrl_4QFR.pdb
: