Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MENDSL--CGGHILQEG----LHVRFARMHI-WAVTRYTSNGRMGM---RIFDRWWMDFG----GG
1RYJ Chain:A ((4-73))
MVIGMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYGG
General information:
TITO was launched using:
RESULT:
Template:
1RYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21726 for 284 contacts (-76.5/contact) +
2D Compatibility (PS) -5478 + (NN) 420 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -32634.0 ( -114.91 by residue)
QMean score : -0.086
(partial model without unconserved sides chains):
PDB file :
Tito_1RYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYJ-query.scw
PDB file :
Tito_Scwrl_1RYJ.pdb
: