Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQEL---VRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
3UWU Chain:B ((9-260))
MRTPIIAGNWKMNKTVQEAKDFVNALPT-LPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA-
General information:
TITO was launched using:
RESULT:
Template:
3UWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124586 for 2132 contacts (-58.4/contact) +
2D Compatibility (PS) -27283 + (NN) -13423 + (LL) -16
1D Compatibility (HY) -23600 + (ID) 7900
Total energy: -196808.0 ( -92.31 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3UWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWU-query.scw
PDB file :
Tito_Scwrl_3UWU.pdb
: