Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKKVVTD-LDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAI-LFSHLGKVKTEEDKEGKSLRPVAVRLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRF--------EDIDGKKESKNDPELGKYWASL---GDVFVNDAFGTAHRAHASNVGIASNL-ESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAA-QGQEIGKSLLEADKVELAKGLLEKA---GDKLVLPVDAVVSKEFSNDAPF-HTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTIGVCEAIANLTD--ATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK |
| 3C3C Chain:B ((6-419)) | LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCV----EKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGV--NLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGG-------------DKVSHVSTGGGASLELLEGKVLPGVDALSN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C3C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188511 for 3180 contacts (-59.3/contact) +
2D Compatibility (PS) -39755 + (NN) -7757 + (LL) 860
1D Compatibility (HY) -37200 + (ID) 9100
Total energy: -281463.0 ( -88.51 by residue)
QMean score : 0.550
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