Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDT-PWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDL-DNQANTICDKMATKTNTKHRVLYVPEQLGEE-AYRSLLKEPAIQEGLRLVQSANAIILGIGDALAM---AKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVH---KVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK |
2GNP Chain:A ((9-265)) | ---------------------------------------------------------------------------------------------MFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDN-MKIGFSWGKSLSNLVDLIHSKS--VRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRA-NLVNHLITDKNTILKVLEEDGD--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -115702 for 2047 contacts (-56.5/contact) +
2D Compatibility (PS) -27134 + (NN) -17233 + (LL) 8812
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -166257.0 ( -81.22 by residue)
QMean score : 0.449
|
|
|