Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVIDTHCDALYKLQAGKG-KYTFQ--DAEELDVNFERLIEAKMLLQGFAIFLDEDI-PV-----------------------EHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLP-EDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIME------ERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEFV-IASHSSAKAICAHPRNLDDEQIKAMIEHDAMIHVIFHPLFTTNDG----VADIEDVIRHIDHICELGGMKNIGFGSDFDGIPDHVKGLEHAGKYQNFLETLG-KHYTKEEVEGFASRNFLNHLPK |
| 3LY0 Chain:A ((7-353)) | IPVFDGHNDFLLRLLRNPANRETIWLKGDGTGHLDLPRMKEGGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCRTAAEVRSCHADGIVSGIMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAGRRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMIRESRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMGSDFDGATI-PQGIADVTGLPALQAAMRAHGYDEPLMRKLCHENWYGLLER |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LY0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166246 for 2781 contacts (-59.8/contact) +
2D Compatibility (PS) -32815 + (NN) -13640 + (LL) 44
1D Compatibility (HY) -13600 + (ID) 3800
Total energy: -230057.0 ( -82.72 by residue)
QMean score : 0.486
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