Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LAKIKVMSIFGTRPE-----AIKMAPLVLALEKEPETFESTVVITAQHREM--LDQVLEIFDIKPDIDLDIMKK----GQTLAEITSRVMNGINEVI--AAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRTWNKY-SP----FPEEMNRQLTGVMADIHFSPTKQAKENLLAE-GKDPATIFVTGNTAIDALKTTVQK-DYHHPILENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVESRE--DTELVYPMHLNPAVREKAMA---ILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFEETDRPEDFIV |
| 3C48 Chain:A ((19-425)) | -SHMRVAMISMHTSPLQQGMNVYILSTATELAKQ-G-IEVDIYTRATRPSQGEIVRVAE--NL-RVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQV-GWLLRDLWRIPLIHTAHTLAAVKNSY-DTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG--TERSRRELGIPLHTKVVAFVGRLQP--FKGPQVLIKAVAALFDRDPDRNLRVI-ICGGPS---DTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAAR-VGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDA-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134529 for 2980 contacts (-45.1/contact) +
2D Compatibility (PS) -38545 + (NN) -15910 + (LL) 1776
1D Compatibility (HY) -7200 + (ID) 3050
Total energy: -197458.0 ( -66.26 by residue)
QMean score : 0.406
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