Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTVKLNNGVEVPILGFGTYQITDAAEAEHAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPF--NDVY-GAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLDQGESQFFSHADPEMVKWMASRKLNV
3O0K Chain:B ((28-283))
--TVKLNDGNHIPQLGYGVWQISND-EAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLG-----LLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3O0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152739 for 2153 contacts (-70.9/contact) +
2D Compatibility (PS) -26990 + (NN) -11602 + (LL) 2108
1D Compatibility (HY) -21600 + (ID) 5800
Total energy: -216623.0 ( -100.61 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_3O0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O0K-query.scw
PDB file :
Tito_Scwrl_3O0K.pdb
: