Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
3T1Y Chain:L ((2-119))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT-----
General information:
TITO was launched using:
RESULT:
Template:
3T1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16426 for 790 contacts (-20.8/contact) +
2D Compatibility (PS) -12724 + (NN) -4960 + (LL) 1028
1D Compatibility (HY) -11200 + (ID) 4500
Total energy: -48782.0 ( -61.75 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3T1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1Y-query.scw
PDB file :
Tito_Scwrl_3T1Y.pdb
: