Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAAVLYE-NNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQTRW--KYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIP--LEPCMECNYCKAGDFALCDNYRMVGSHFHGGFAENVVMKADNVISIGD-LDFEEGAMIEPLAVSMHGVLGIQ-PRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNED----LKERVFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSREHDYNKVMILPQKGDD |
| 1RJW Chain:B ((1-339)) | MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV-GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVG------GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG------LPPEEMPIPIF--DTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK---TIIEVQPLEKINEVFDRMLKGQINGRVVLTLEDK--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1RJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233318 for 2891 contacts (-80.7/contact) +
2D Compatibility (PS) -35220 + (NN) -6306 + (LL) 1096
1D Compatibility (HY) -16000 + (ID) 5600
Total energy: -295348.0 ( -102.16 by residue)
QMean score : 0.414
|
|
|