Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGY-VTDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEP--HSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
2A0J Chain:A ((3-147))
-LIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADVFECLFAREKLGSTGL---GQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDG----KPVSLIFILLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEVRAILT----
General information:
TITO was launched using:
RESULT:
Template:
2A0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92107 for 1087 contacts (-84.7/contact) +
2D Compatibility (PS) -15342 + (NN) -6615 + (LL) 1108
1D Compatibility (HY) -7600 + (ID) 1850
Total energy: -122406.0 ( -112.61 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2A0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A0J-query.scw
PDB file :
Tito_Scwrl_2A0J.pdb
: