Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTNLIQLPGIGKKMVLMLNEIGIEEVADLRGRNPLELYEDTCDKRGERMDPCVLYTYRCAVYVAETDEAEQDVDLRKWWNWKDKQHTNERNLKNE
3GQC Chain:A ((644-688))
--QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTG-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13404 for 257 contacts (-52.2/contact) +
2D Compatibility (PS) -5069 + (NN) -4017 + (LL) 3740
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -20600.0 ( -80.16 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3GQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQC-query.scw
PDB file :
Tito_Scwrl_3GQC.pdb
: