Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
4UTU Chain:B ((10-227))
----MLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIARNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK--GRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSN--SVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTD-----------
General information:
TITO was launched using:
RESULT:
Template:
4UTU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134251 for 1913 contacts (-70.2/contact) +
2D Compatibility (PS) -23687 + (NN) -11380 + (LL) 1096
1D Compatibility (HY) -21200 + (ID) 5600
Total energy: -195022.0 ( -101.95 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_4UTU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTU-query.scw
PDB file :
Tito_Scwrl_4UTU.pdb
: