Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MDNLIRLAEIFDVSLDEH-----VLAKTNEVKVER------IYENKPLDLR----KYNKIYWFIFRNIIRSLLIILAILTFL-
2KXG Chain:A ((1-95))
GPGPAIGEVIGISVNDPRVKEIAEFALKQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVVVLEKASDNSLKLVAFVPLF
General information:
TITO was launched using:
RESULT:
Template:
2KXG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23448 for 438 contacts (-53.5/contact) +
2D Compatibility (PS) -7400 + (NN) 2644 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -30554.0 ( -69.76 by residue)
QMean score : 0.155
(partial model without unconserved sides chains):
PDB file :
Tito_2KXG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KXG-query.scw
PDB file :
Tito_Scwrl_2KXG.pdb
: