Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFKITRTHLEILSLIIIVVFGLSVFTLTTSSQGVLSYDGGKIKYVGSIVNHHMTGKGKL--TY--ENGDY-------YKG--DFVNGVFEGKGTFVSVHGWSYTGDFKKGQPDGQGRLNAKNKKVYKGTFKQGIYQK
2C3O Chain:B ((448-538))
--------------------------------AQGYFSYDSKKSG--GITISHLRFGEKPIQSTYLVNRADYVACHNPAYVGIYDILEGIKDG-GTFVLNSPWSSLEDMDKHLPSGIKRTIA-NKKLKFYNIDAVKIAT
General information:
TITO was launched using:
RESULT:
Template:
2C3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5088 for 374 contacts (13.6/contact) +
2D Compatibility (PS) -8557 + (NN) -5203 + (LL) 3792
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -10130.0 ( -27.09 by residue)
QMean score : -0.045
(partial model without unconserved sides chains):
PDB file :
Tito_2C3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C3O-query.scw
PDB file :
Tito_Scwrl_2C3O.pdb
: