Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTRNVLAISGNDIFSGGGLHADLATYVVNKLHGFVAVTCLTAMSDKGF--EVIPIEASILKQQLESLKDVEFGSIKLGLLPNVETAQVVLEFVKSKQECPVVLDPVLVCKENHDLEVSQLREQLIAFF-PYADVITPNLVEAQLLTGLS-IENLDQMKIAAEKLYDMGAKHVVIKGGNRLNAEEATDLYYDGERFETYVFPVVDAN-NTGAGCTFASSIASQLAMGKNVEDAVKMSKGFVYQAI----KASDKYGVVQHF
4C5N Chain:B ((4-260))
---KKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDVFEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMV-------LNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHG
General information:
TITO was launched using:
RESULT:
Template:
4C5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154506 for 2151 contacts (-71.8/contact) +
2D Compatibility (PS) -26900 + (NN) -12277 + (LL) 612
1D Compatibility (HY) -14000 + (ID) 4550
Total energy: -211621.0 ( -98.38 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4C5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5N-query.scw
PDB file :
Tito_Scwrl_4C5N.pdb
: