Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLP--FNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
4YF5 Chain:B ((11-170))
--TVTDDYLANNVDYASGF-KGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR---PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT
General information:
TITO was launched using:
RESULT:
Template:
4YF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76247 for 1061 contacts (-71.9/contact) +
2D Compatibility (PS) -17088 + (NN) -10888 + (LL) 168
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -121555.0 ( -114.57 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4YF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF5-query.scw
PDB file :
Tito_Scwrl_4YF5.pdb
: