Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSHAWKELTFYKKKYLLIELLIIVMM-FMVVFLSGLANGLGRAVSAA--IENNPAQTYILNEGAEQVITSSVLTTKDQTDLNSLNLKDSTTLNIQRSSLTRQGHEKKIDISYFAIDKDSFMAPTLSEGKQLTSYKKAIILNDSLKAEGIKLGDKVIDKSSSISLTVVGFVHNSMYGHGPVAFIDKDIYTEINKKINPQYQFLPQALVMKNDKSISHLPTQLEAVSKKDVIQHIPGYSAEQSTLNMILWVLVVASAGILGVFFYIITLQKRHEFSVMKAIGTKMSEIALFQLSQVIILALFGIIVGDGLAIALSYV----LPAQMPFVINWQNIILVSFVFLVIA---------MISSALSIVKVAKIDPVEVINGGGE--- |
| 4P6V Chain:B ((38-409)) | -GLVTKRSSHVRDSVDLKRIMIMVWLAVFPAMFWGMYNAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMGSKMLLGATYFLPIYATVFIVGGFWEVLFCMVR------------KHEVNEGFFVTSILFALIVPPTLPLWQAALG---ITFGVVVAKEVFGGTGRNFLN--PALAGRAFLFFAYPAQISGDLVWTAADG-YSGATALSQWAQ-----GGAGALINIPGSIGEVSTLALMIGAAFIVYMGIAS---------WRIIGGVMIGMILLSTLFNVIGSDTNAMFNMPWHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93223 for 2563 contacts (-36.4/contact) +
2D Compatibility (PS) -33618 + (NN) 714 + (LL) 3464
1D Compatibility (HY) -20400 + (ID) 2600
Total energy: -145663.0 ( -56.83 by residue)
QMean score : 0.139
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