Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKITTSLFQEMVQAASTRLSKQAEYVNSLNVFPVPDGDTGTNMGMTMENGAKEVSDKPATTVGEVGQILSKGVLMGARGNSGVITSQLFRGFGQSIKDKEELTGQDLAHAFQNGVEVAYKAVMKPVEGTILTVSRGAATAALKKAEETDDAVEVMRATLKGAKRALAKTPEMLPVLKEVGVVDSGGQGLVFIYEGFLSALTGEYIASEDFKATPATMTEMVNAEHHKAVVGHVATEDIKYGYCTEVMVGLKQGPTYVKEFNYEEFQGYLSNLGDSLLVVNDDEIVKVHVHTEDPGLVMQEGLKYGSLVKVKVENMRNQHDAQMQKVEVEETVKETKEYGIIAVVAGDGLAEIFKSQGVDY----IISGG-------------------------QTMNPSTEDIVKAIEKVNARNVIILPNNKNI---FMAAQSAADVVD-----IPAAVVETRTV--PQGFTSLLA---FDPAKSLETNVADMTNSLSDVISGSVTLAVRDTTIDGLEIHEN-----------DILGM-VDGKILVSTPDME--KALKDTFDKMIDE--DSEIVTIYVGEDGKQALAETLSEYLEETYEDVEVEIHQGDQPVYPYLMSVE |
| 3FDJ Chain:A ((3-261)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMRLVADSACDIKEL--RGMVFKAVPLTISTDNEEFCDDGQLDIHRMLDILEKHKGRSYTACPGIDAWLEAFGD--DDEIFVVTITAGMSGTYNSAMAARAVYLEEHPQAKVRVIDSKSTGPQMRIILEQLQQMIEEGKKFEEIDGAIDAYMQKTRL-FCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENE--ALADKIADMIKQAYGTTDVCVYKAGGLCSYYAERGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61142 for 1436 contacts (-42.6/contact) +
2D Compatibility (PS) -21982 + (NN) -9486 + (LL) 23700
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -75010.0 ( -52.24 by residue)
QMean score : 0.398
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