Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MLIIELLKALFLGVVEGVTEWLPVSSTGHLILVQEFMKLNQSKSFVEMFNIVIQLGA--------IMAVIVIYFKRLNPFQPGKSAREIR-----LTWQLWLK----VVIACIP-------SILIALPFDNWFEAHFNFM---------IPIAIALIFYGFVFIWVE----KRNAHLKPQVTELASMSYKTAFLIGCFQVL-----SIVPGTSRSGATILGAIIIGTSRSVAA---DFTFFLAIPTMFGYSGLKAVKYFLDGNVLSLD--------------------QSLILLVASLTAFVVSLYVI-----RFLTDYVKRHDFTIFGKYRIVLGSLLILYWLVV--HLF |
| 3TM4 Chain:A ((1-370)) | MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -292867 for 1895 contacts (-154.5/contact) +
2D Compatibility (PS) -30351 + (NN) -7693 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 2100
Total energy: -337411.0 ( -178.05 by residue)
QMean score : 0.240
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