Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLDMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAK-RQNTRLITVILGVGDWSDQDGEYYRHPFVNALVEKGFKDAKNISSKTPVLKAVKPKKEVTKTKTKSIQEQPQTK-EQWWTKTDQFIQSHFVSILIVLGTIAILCLLAGIVLLIKRSR |
| 3A3J Chain:A ((4-294)) | ----------------------------------------PPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN-FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHIS-GNVPNFVETMNKYVQQFGLKNTNFTTPHGLDD---------------PNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNK-----IKQPNRNGLLWD---KTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTY------KGREVESKKLLQWGFANFETFKTLEA-GKEI-SEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYALDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66930 for 2439 contacts (-27.4/contact) +
2D Compatibility (PS) -30849 + (NN) -10675 + (LL) 4512
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -117342.0 ( -48.11 by residue)
QMean score : 0.452
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