Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYLSKLSDLDPSLMDADSEQIY-IPKVLFEHNDFKGLTYKEILLYSFLLNRLREPLDFIQKGYDDNEDTYVHFKVEDLCELLNQSKTTVISLKKRLAQYGLIEEVKAGS---HQPNRIYLTDKLVPYIKG
2V79 Chain:A ((10-101))
-----------------QEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHL-------E---KGSY----FPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLYEY
General information:
TITO was launched using:
RESULT:
Template:
2V79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28475 for 536 contacts (-53.1/contact) +
2D Compatibility (PS) -9567 + (NN) -3038 + (LL) 1856
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -41574.0 ( -77.56 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2V79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V79-query.scw
PDB file :
Tito_Scwrl_2V79.pdb
: