Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
2BGW Chain:A ((163-212))
---------------------------------------------ILQSFPGIGRRTAERILE-RFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTPYK
General information:
TITO was launched using:
RESULT:
Template:
2BGW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32076 for 320 contacts (-100.2/contact) +
2D Compatibility (PS) -5207 + (NN) 925 + (LL) 3308
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -35200.0 ( -110.00 by residue)
QMean score : 0.764
(partial model without unconserved sides chains):
PDB file :
Tito_2BGW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BGW-query.scw
PDB file :
Tito_Scwrl_2BGW.pdb
: