Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK
1BTM Chain:B ((1-247))
--RKPIIAGNWKMHKTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGPLVGGASLEPASFLQLVEAGR
General information:
TITO was launched using:
RESULT:
Template:
1BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101188 for 2168 contacts (-46.7/contact) +
2D Compatibility (PS) -27367 + (NN) -14542 + (LL) 180
1D Compatibility (HY) -24000 + (ID) 6650
Total energy: -173567.0 ( -80.06 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BTM-query.scw
PDB file :
Tito_Scwrl_1BTM.pdb
: