Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILS----NFPDQKITMIEHDSYYKDQSHLTFEERVKT-----NYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
1UEI Chain:B ((21-232))
---EPFLIGVSGGTASGKSSVCAKIVQLLGQ-YRQKQVVILSQDSFYR---VLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG--
General information:
TITO was launched using:
RESULT:
Template:
1UEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85159 for 1542 contacts (-55.2/contact) +
2D Compatibility (PS) -21367 + (NN) -5327 + (LL) 556
1D Compatibility (HY) -22400 + (ID) 4600
Total energy: -138297.0 ( -89.69 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1UEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UEI-query.scw
PDB file :
Tito_Scwrl_1UEI.pdb
: