Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
3RCC Chain:L ((10-147))
---------------------------------------------------------------------------------------HNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGPNNYALASHHVF--------LFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPE---RIIVHAELEKTG----------------------
General information:
TITO was launched using:
RESULT:
Template:
3RCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74946 for 913 contacts (-82.1/contact) +
2D Compatibility (PS) -13868 + (NN) -5152 + (LL) 9056
1D Compatibility (HY) -17600 + (ID) 6250
Total energy: -108760.0 ( -119.12 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3RCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCC-query.scw
PDB file :
Tito_Scwrl_3RCC.pdb
: