Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEAIIAKKAEQVELIAEKMKAAASIVVVDSRGLTVEQDTNLRRSLRESDVEFKVIKNSILIRAAEKA-----GLEDLKELFVGPSAVAFSNEDVIAPAKVISDFAKDAEALEIKGGSVDGKFTSVEEINALAKLPNKEGMLSMLLSVLQAPVRNVAYAVKAVAEKDEEVA
3J16 Chain:G ((1-105))
-MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAV-VLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSE
General information:
TITO was launched using:
RESULT:
Template:
3J16.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18220 for 599 contacts (-30.4/contact) +
2D Compatibility (PS) -10922 + (NN) -3530 + (LL) 312
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -40460.0 ( -67.55 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_3J16.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J16-query.scw
PDB file :
Tito_Scwrl_3J16.pdb
: